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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ATAC-seq
67
total RNA-seq
47
WGBS
20
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
6
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
98
DNA accessibility
67
Transcription
49
DNA methylation
20
DNA binding
6
3D chromatin structure
Target of assay
14
histone
14
histone modification
11
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
80
May, 2022
56
February, 2023
20
August, 2017
19
September, 2020
17
May, 2021
10
November, 2020
8
January, 2021
8
March, 2020
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
March, 2019
4
October, 2019
October, 2022
2
July, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
October, 2017
Available data
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
253
Homo sapiens
Biosample type
149
primary cell
76
tissue
29
cell line
Organ
254
pancreas
210
kidney
204
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
149
HPAP
77
AMP
28
T1D
Genome assembly (visualization)
20
hg19
14
GRCh38
Lab
149
Klaus Kaestner, Upenn
61
AMP-T2D consortium
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
month_released!
October, 2022
files.file_type!
bam
BIOSAMPLE
ASSAY
254 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
pancreatic acinar cell
4
tissue
islet of Langerhans
20
12
20
7
4
3
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
EndoC_BH1
18
6
1
2
1
Panc1
1
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