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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
RRBS
Assay category
46
DNA binding
24
Transcription
4
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
29
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
25
November, 2017
15
July, 2019
12
February, 2020
11
October, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
235
bam
213
bigWig
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
79
Homo sapiens
Biosample type
73
tissue
6
primary cell
Organ
729
pancreas
609
connective tissue
478
adipose tissue
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
19
hg19
16
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
October, 2022
files.file_type!
bed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
RRBS
tissue
brain
9
1
1
1
cingulate gyrus
7
layer of hippocampus
6
cerebellum (Hemisphere)
2
1
1
1
substantia nigra
4
1
+ See 24 more…
primary cell
astrocyte of the cerebellum
1
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
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