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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
4
Hi-C
2
ChIP-seq
2
total RNA-seq
1
pCHi-C
Assay category
27
DNA accessibility
4
3D chromatin structure
2
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
broad histone mark
Date released
24
June, 2019
4
July, 2019
2
August, 2021
2
May, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
509
bam
495
bigWig
376
fastq
270
tsv
183
bed narrowPeak
153
zippedFastqFolder
88
bigBed narrowPeak
49
tagAlign
41
bed broadPeak
41
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
36
Homo sapiens
Biosample type
199
tissue
36
primary cell
21
in vitro differentiated cells
3
cell line
2
stem cell
Organ
20
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
6
blood vessel
5
liver
3
heart
2
vein
1
eye
1
musculature of body
Project
36
AMP
Genome assembly (visualization)
29
GRCh38
29
hg19
Lab
34
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
month_released!
October, 2022
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
36 results
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DNase-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
primary cell
cardiac fibroblast
3
hepatocyte
1
2
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
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