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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
snATAC-seq
Assay category
68
Transcription
4
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
3
February, 2023
October, 2022
Available data
3350
bam
3139
bigWig
1779
bed narrowPeak
1600
tsv
1323
fastq
1012
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
156
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
156
Homo sapiens
Biosample type
153
tissue
3
in vitro differentiated cells
Organ
88
bone element
62
kidney
6
pancreas
skeleton
1
musculature of body
Project
156
AMP
Genome assembly (visualization)
4
hg19
Lab
90
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
month_released!
October, 2022
December, 2018
organ_slims!
skeleton
BIOSAMPLE
ASSAY
156 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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