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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
total RNA-seq
3
small RNA-seq
1
pCHi-C
Assay category
29
Transcription
Date released
May, 2020
9
August, 2021
7
July, 2019
5
December, 2019
5
January, 2019
2
March, 2020
1
February, 2020
1
October, 2019
Available data
488
bam
465
fastq
452
bigWig
414
bed narrowPeak
358
bigBed narrowPeak
63
bed broadPeak
63
bigBed broadPeak
36
tagAlign
30
tsv
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
30
Homo sapiens
Biosample type
14
cell line
11
tissue
5
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
30
liver
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
19
GRCh38
19
hg19
Lab
21
AMP-T2D consortium
9
Bing Ren, UCSD
month_released!
October, 2022
May, 2020
BIOSAMPLE
ASSAY
30 results
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total RNA-seq
small RNA-seq
pCHi-C
cell line
HepG2
14
tissue
liver
4
1
1
right lobe of liver
3
2
primary cell
hepatocyte
5
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