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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
total RNA-seq
ATAC-seq
50
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
1
pCHi-C
Assay category
255
Transcription
50
DNA binding
27
DNA methylation
8
3D chromatin structure
2
DNA accessibility
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
314
bam
294
bigWig
254
tsv
50
tagAlign
29
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
343
Homo sapiens
Biosample type
264
tissue
78
primary cell
1
cell line
Organ
204
liver
21
heart
18
connective tissue
17
brain
13
epithelium
12
adipose tissue
11
kidney
10
musculature of body
10
vasculature
9
blood vessel
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
298
AMP
45
T1D
Genome assembly (visualization)
301
hg19
280
GRCh38
Lab
298
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
month_released!
October, 2022
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
343 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
pCHi-C
tissue
liver
145
50
1
heart left ventricle
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 24 more…
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 47 more…
cell line
HepG2
1
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