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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
total RNA-seq
51
ATAC-seq
27
ChIP-seq
18
small RNA-seq
8
WGBS
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
253
Transcription
53
DNA accessibility
27
DNA binding
8
DNA methylation
4
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
3
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
365
bam
345
bigWig
254
tsv
50
tagAlign
34
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
345
Homo sapiens
Biosample type
233
tissue
112
primary cell
Organ
178
liver
21
heart
17
connective tissue
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
7
epithelium
7
kidney
5
musculature of body
4
pancreas
3
artery
1
limb
1
pericardium
Project
300
AMP
45
T1D
Genome assembly (visualization)
336
hg19
286
GRCh38
Lab
300
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
month_released!
October, 2022
BIOSAMPLE
ASSAY
345 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
small RNA-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
liver
145
27
1
heart left ventricle
2
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 21 more…
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 39 more…
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