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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1338
total RNA-seq
1319
ChIP-seq
508
ATAC-seq
368
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
54
pCHi-C
27
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
15
Transcription
Date released
15
July, 2019
3
February, 2023
Available data
15
bam
15
bigWig
15
tsv
Organism
18
Homo sapiens
Biosample type
13
tissue
3
cell line
2
primary cell
Organ
4
brain
3
adipose tissue
3
connective tissue
liver
2
musculature of body
2
pancreas
1
heart
1
kidney
Project
15
AMP
3
T1D
Genome assembly (visualization)
15
GRCh38
15
hg19
Lab
15
AMP-T2D consortium
3
Kyle Gaulton, UCSD
month_released!
October, 2022
organ_slims!
liver
BIOSAMPLE
ASSAY
18 results
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small RNA-seq
CRISPR genome editing followed by DNA sequencing
tissue
body of pancreas
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
heart
1
+ See 7 more…
cell line
EndoC_BH1
3
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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