Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
414
total RNA-seq
282
ChIP-seq
29
DNase-seq
10
ATAC-seq
6
WGBS
6
small RNA-seq
4
pCHi-C
1
FAIRE-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
282
DNA binding
40
DNA accessibility
7
DNA methylation
Target of assay
216
histone
216
histone modification
126
narrow histone mark
90
broad histone mark
49
control
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
87
October, 2019
82
November, 2017
57
August, 2017
28
May, 2019
26
June, 2019
23
October, 2018
21
July, 2019
17
October, 2017
14
February, 2020
3
March, 2020
3
November, 2018
2
February, 2023
1
August, 2018
1
August, 2021
1
January, 2018
1
May, 2023
1
November, 2019
Available data
666
bam
625
bigWig
422
tsv
205
bed narrowPeak
126
bigBed narrowPeak
126
tagAlign
56
fastq
39
bed broadPeak
33
bed bed3+
29
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
Organism
753
Homo sapiens
Biosample type
753
tissue
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
754
AMP
Genome assembly (visualization)
625
GRCh38
567
hg19
Lab
754
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
16
missing controlled_by
month_released!
October, 2022
biosample_type!
primary cell
BIOSAMPLE
ASSAY
754 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
FAIRE-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
brain
1
20
14
1
1
layer of hippocampus
23
subcutaneous adipose tissue
7
12
1
1
1
+ See 84 more…
in vitro differentiated cells
white fat cell
1
See all biosamples
Download