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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
14
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
34
DNA binding
14
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
broad histone mark
3
other context
3
other post-translational modification
Date released
12
December, 2017
10
February, 2018
9
November, 2018
8
August, 2021
7
December, 2018
3
January, 2019
2
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
52
bam
43
fastq
37
bigWig
20
bed narrowPeak
15
tsv
9
bigBed narrowPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
54
Homo sapiens
Biosample type
25
in vitro differentiated cells
21
tissue
8
cell line
Organ
865
pancreas
749
liver
640
connective tissue
477
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
37
GRCh38
35
hg19
1
hg18
Lab
54
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
October, 2022
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
14
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
16
2
1
1
1
cell line
H1-hESC
8
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