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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
14
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
1
GRO-seq
1
pCHi-C
Assay category
23
Transcription
14
DNA binding
10
DNA accessibility
Target of assay
12
histone
12
histone modification
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
19
April, 2020
10
February, 2018
8
August, 2021
8
December, 2017
2
May, 2021
1
January, 2018
1
March, 2020
Available data
28
bam
22
bigWig
19
fastq
15
tsv
7
bed narrowPeak
2
bed bed3+
Organism
48
Homo sapiens
Biosample type
21
in vitro differentiated cells
20
tissue
8
cell line
Organ
870
pancreas
731
liver
651
connective tissue
479
adipose tissue
472
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
19
LungMap
Genome assembly (visualization)
22
GRCh38
22
hg19
1
hg18
Lab
30
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
October, 2022
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
lung
10
9
1
cell line
H1-hESC
8
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