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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
29
ATAC-seq
24
total RNA-seq
6
DNase-seq
4
pCHi-C
1
RRBS
Assay category
40
DNA binding
35
DNA accessibility
24
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
63
October, 2019
31
February, 2023
7
June, 2019
2
February, 2020
1
July, 2019
Available data
60
bed narrowPeak
49
bam
37
bigWig
32
bigBed narrowPeak
10
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
104
Homo sapiens
Biosample type
99
tissue
5
primary cell
Organ
943
pancreas
791
liver
684
connective tissue
521
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
65
hg19
37
GRCh38
Lab
104
AMP-T2D consortium
month_released!
October, 2022
organ_slims!
small intestine
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
tissue
tibial nerve
35
1
5
2
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
1
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