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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
3
small RNA-seq
2
pCHi-C
Assay category
172
Transcription
Date released
144
May, 2020
9
August, 2021
7
July, 2019
5
December, 2019
5
January, 2019
2
March, 2020
1
February, 2020
1
October, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
vcf
Organism
174
Homo sapiens
Biosample type
154
tissue
15
cell line
5
primary cell
Organ
474
connective tissue
401
adipose tissue
317
pancreas
174
liver
76
heart
62
blood vessel
62
vasculature
60
epithelium
58
bone element
56
artery
23
brain
19
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
174
AMP
Genome assembly (visualization)
162
GRCh38
162
hg19
Lab
165
AMP-T2D consortium
9
Bing Ren, UCSD
month_released!
September, 2018
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
174 results
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total RNA-seq
small RNA-seq
pCHi-C
tissue
liver
147
1
1
right lobe of liver
3
2
cell line
HepG2
14
1
primary cell
hepatocyte
5
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