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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
total RNA-seq
141
single cell RNA-seq
84
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
338
Transcription
136
DNA accessibility
84
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
5
March, 2023
3
October, 2022
Available data
190
bigWig
180
bam
169
fastq
153
zippedFastqFolder
102
tsv
84
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
625
Homo sapiens
Biosample type
528
primary cell
93
tissue
7
cell line
2
stem cell
Organ
178
pancreas
152
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
324
HPAP
235
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
191
GRCh38
183
hg19
Lab
324
Klaus Kaestner, Upenn
235
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
month_released!
September, 2018
award.project!
AMP
organ_slims!
bone element
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
630 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 36 more…
tissue
kidney
47
islet of Langerhans
5
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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