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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
20
ATAC-seq
3
WGBS
2
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
145
DNA binding
22
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
65
histone modification
64
histone
43
control
42
narrow histone mark
37
transcription factor
22
broad histone mark
2
chromatin remodeller
1
RNA binding protein
Date released
52
August, 2017
50
May, 2020
38
December, 2017
20
May, 2022
6
November, 2018
5
October, 2019
2
March, 2020
Available data
124
bam
104
bed narrowPeak
104
bigWig
71
fastq
70
tagAlign
40
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
173
Homo sapiens
Biosample type
173
tissue
Organ
173
liver
Project
173
AMP
Genome assembly (visualization)
107
hg19
77
GRCh38
Lab
153
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
month_released!
September, 2018
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
tissue
liver
145
20
3
2
1
1
1
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