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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
221
total RNA-seq
186
ATAC-seq
186
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
409
Transcription
274
DNA accessibility
235
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
193
histone
193
histone modification
101
broad histone mark
92
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
47
August, 2017
43
April, 2018
September, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
529
bigWig
525
bam
324
fastq
249
bed narrowPeak
244
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
1003
Homo sapiens
Biosample type
2711
tissue
1003
primary cell
649
cell line
388
in vitro differentiated cells
10
stem cell
Organ
345
epithelium
262
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
474
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
544
hg19
452
GRCh38
Lab
439
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2018
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
1003 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
42
32
12
31
1
pancreatic beta cell
13
11
19
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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