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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
18
snATAC-seq
16
ATAC-seq
16
pCHi-C
13
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
70
DNA binding
34
DNA accessibility
13
Transcription
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
99
May, 2021
23
February, 2023
16
January, 2021
Available data
220
bigWig
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
138
Homo sapiens
Biosample type
59
primary cell
47
in vitro differentiated cells
27
tissue
5
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
thymus
Project
83
AMP
55
T1D
Genome assembly (visualization)
40
hg19
Lab
723
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
138
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
September, 2018
files.file_type!
bam
organ_slims!
thymus
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
CD8-positive, alpha-beta T cell
33
1
2
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
6
11
5
pancreas
4
1
cell line
EndoC_BH1
3
2
See all biosamples
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