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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
3
single cell RNA-seq
2
WGBS
1
FAIRE-seq
Assay category
181
DNA binding
92
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
291
fastq
285
bam
275
bigWig
142
bed narrowPeak
92
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
bedpe bed3+
Organism
278
Homo sapiens
Biosample type
170
tissue
61
primary cell
54
in vitro differentiated cells
Organ
171
pancreas
71
connective tissue
32
epithelium
26
liver
17
adipose tissue
Project
285
AMP
Genome assembly (visualization)
255
hg19
252
GRCh38
Lab
285
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2018
BIOSAMPLE
ASSAY
285 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
pancreas
14
white adipose tissue
12
adipose tissue
2
2
+ See 2 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
2
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
1
in vitro differentiated cells
adipocyte
53
1
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