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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
single cell RNA-seq
66
total RNA-seq
58
ATAC-seq
51
ChIP-seq
47
WGBS
14
DNase-seq
6
RRBS
3
Hi-C
Assay category
136
Transcription
72
DNA accessibility
53
DNA methylation
51
DNA binding
3
3D chromatin structure
Target of assay
29
histone
29
histone modification
18
control
17
narrow histone mark
12
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
80
May, 2022
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
29
August, 2017
19
September, 2020
18
June, 2019
12
October, 2019
10
July, 2019
7
August, 2020
6
February, 2021
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
June, 2018
Available data
174
fastq
155
bam
147
bigWig
89
tsv
80
zippedFastqFolder
54
bed narrowPeak
30
bigBed narrowPeak
15
bed bed3+
14
bed broadPeak
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
315
Homo sapiens
Biosample type
315
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
345
epithelium
274
pancreas
39
connective tissue
37
vasculature
36
kidney
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
163
AMP
152
HPAP
Genome assembly (visualization)
147
GRCh38
142
hg19
Lab
163
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
3
audit script error
Audit category:
4
inconsistent control read length
month_released!
September, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
315 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
DNase-seq
RRBS
Hi-C
primary cell
pancreatic alpha cell
12
42
32
13
31
1
pancreatic beta cell
12
11
19
13
16
1
pancreatic acinar cell
12
2
6
1
epithelial cell of proximal tubule
1
10
1
1
hepatocyte
5
4
1
1
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