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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
70
single cell RNA-seq
62
total RNA-seq
58
ATAC-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
132
Transcription
77
DNA accessibility
71
DNA binding
53
DNA methylation
7
3D chromatin structure
Target of assay
45
histone
45
histone modification
24
narrow histone mark
21
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
177
fastq
176
bam
165
bigWig
85
tsv
80
zippedFastqFolder
71
bed narrowPeak
47
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
340
Homo sapiens
Biosample type
340
primary cell
79
cell line
24
in vitro differentiated cells
14
tissue
Organ
340
epithelium
274
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
9
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
188
AMP
152
HPAP
Genome assembly (visualization)
161
hg19
159
GRCh38
Lab
188
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
4
inconsistent control read length
month_released!
September, 2018
December, 2019
BIOSAMPLE
ASSAY
340 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
12
42
32
31
1
pancreatic beta cell
13
12
11
19
16
1
endothelial cell of umbilical vein
17
2
2
1
pancreatic acinar cell
12
2
6
1
epithelial cell of proximal tubule
10
1
1
1
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