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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
total RNA-seq
186
ChIP-seq
138
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
138
DNA accessibility
Date released
57
May, 2022
20
November, 2019
16
May, 2021
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
Available data
51
bam
50
bed narrowPeak
42
fastq
39
zippedFastqFolder
27
bigWig
8
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
138
Homo sapiens
Biosample type
62
tissue
57
primary cell
19
cell line
Organ
138
pancreas
89
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
78
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
57
hg19
45
GRCh38
Lab
55
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
month_released!
September, 2018
BIOSAMPLE
ASSAY
138 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
58
body of pancreas
4
primary cell
pancreatic alpha cell
32
pancreatic beta cell
19
pancreatic acinar cell
6
cell line
EndoC_BH1
19
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