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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
18
snATAC-seq
9
single cell RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
60
DNA binding
19
DNA accessibility
9
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
19
April, 2020
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
60
bam
60
fastq
55
bigWig
54
bed narrowPeak
54
bigBed narrowPeak
1
tsv
Organism
88
Homo sapiens
Biosample type
61
cell line
20
tissue
8
primary cell
Organ
602
liver
546
pancreas
390
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
62
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
62
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
September, 2020
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
pCHi-C
cell line
GM12878
60
1
tissue
lung
10
9
1
primary cell
peripheral blood mononuclear cell
8
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