Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
907
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
907
DNA binding
260
DNA accessibility
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
211
October, 2019
178
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
79
February, 2023
74
October, 2018
64
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
38
May, 2022
23
October, 2017
20
November, 2019
11
May, 2023
10
November, 2018
8
February, 2021
7
December, 2018
7
January, 2019
6
July, 2019
6
September, 2017
4
March, 2019
4
March, 2020
2
January, 2018
Available data
803
bed narrowPeak
786
bam
658
bigWig
380
bigBed narrowPeak
249
fastq
238
tagAlign
64
xls
37
bed broadPeak
28
bed bed3+
5
bed bed3
1
tagAlign bed3+
1
tsv
Organism
1160
Homo sapiens
Biosample type
1167
tissue
513
cell line
476
primary cell
240
in vitro differentiated cells
3
stem cell
Organ
213
brain
179
pancreas
176
liver
162
heart
111
blood vessel
111
vasculature
102
kidney
80
connective tissue
79
adipose tissue
74
limb
65
artery
36
nerve
30
eye
30
musculature of body
21
spleen
12
bone element
12
epithelium
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
1154
AMP
13
T1D
Genome assembly (visualization)
748
GRCh38
651
hg19
Lab
998
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
September, 2020
BIOSAMPLE
ASSAY
1167 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
145
20
islet of Langerhans
71
68
kidney
27
75
coronary artery
5
36
left cardiac atrium
40
+ See 119 more…
See all biosamples
Download