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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
total RNA-seq
101
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
57
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
181
Transcription
Date released
81
February, 2023
51
May, 2021
45
May, 2020
September, 2020
4
March, 2020
Available data
98
bam
98
bigWig
98
tsv
76
fastq
Organism
181
Homo sapiens
Biosample type
172
primary cell
7
tissue
2
cell line
Organ
46
pancreas
39
epithelium
Project
AMP
105
T1D
76
HPAP
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
101
Kyle Gaulton, UCSD
76
Klaus Kaestner, Upenn
4
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
September, 2020
award.project!
AMP
BIOSAMPLE
ASSAY
181 results
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total RNA-seq
primary cell
monocyte
53
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
B cell
2
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tissue
islet of Langerhans
7
cell line
EndoC_BH1
2
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