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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
total RNA-seq
86
ChIP-seq
56
snATAC-seq
47
WGBS
46
ATAC-seq
45
single cell RNA-seq
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
223
Transcription
102
DNA accessibility
86
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
134
May, 2022
81
February, 2023
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
5
March, 2023
3
March, 2020
3
October, 2022
Available data
191
bigWig
184
bam
134
zippedFastqFolder
128
fastq
104
tsv
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
479
Homo sapiens
Biosample type
470
primary cell
tissue
11
cell line
2
stem cell
Organ
137
epithelium
137
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
265
HPAP
213
T1D
4
community
1
ITG
Genome assembly (visualization)
192
GRCh38
187
hg19
Lab
265
Klaus Kaestner, Upenn
209
Kyle Gaulton, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
9
inconsistent ontology term
month_released!
September, 2020
biosample_type!
tissue
award.project!
AMP
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
snATAC-seq
WGBS
ATAC-seq
single cell RNA-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
48
45
pancreatic alpha cell
27
31
27
1
pancreatic beta cell
10
16
15
1
exocrine cell
39
+ See 37 more…
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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