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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
total RNA-seq
197
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
380
Transcription
285
DNA accessibility
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
367
bam
363
bigWig
274
fastq
270
tsv
134
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
750
Homo sapiens
Biosample type
1870
tissue
750
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
295
epithelium
257
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
364
AMP
265
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
381
hg19
326
GRCh38
Lab
362
AMP-T2D consortium
265
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
29
inconsistent ontology term
month_released!
September, 2020
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
750 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
37
33
12
31
1
Langerhans cell
45
48
monocyte
54
15
1
1
pancreatic beta cell
20
22
12
16
1
exocrine cell
39
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