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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
total RNA-seq
147
single cell RNA-seq
2
small RNA-seq
Assay category
380
Transcription
285
DNA accessibility
279
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
September, 2020
55
May, 2021
48
July, 2018
47
May, 2020
43
April, 2018
33
May, 2022
27
September, 2018
18
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
254
bigWig
252
bam
252
tsv
210
fastq
33
zippedFastqFolder
2
bed bed3+
2
csv
Organism
380
Homo sapiens
Biosample type
1227
tissue
380
primary cell
138
in vitro differentiated cells
115
cell line
2
stem cell
Organ
147
epithelium
139
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
163
AMP
121
HPAP
96
T1D
Genome assembly (visualization)
254
hg19
252
GRCh38
Lab
161
AMP-T2D consortium
121
Klaus Kaestner, Upenn
98
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
month_released!
September, 2020
BIOSAMPLE
ASSAY
380 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
54
pancreatic alpha cell
37
12
Langerhans cell
45
exocrine cell
39
pancreatic beta cell
20
12
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