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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
total RNA-seq
117
ChIP-seq
56
snATAC-seq
47
WGBS
46
ATAC-seq
45
single cell RNA-seq
16
pCHi-C
4
Hi-C
Assay category
219
Transcription
117
DNA binding
102
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
186
May, 2021
134
May, 2022
76
February, 2023
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
222
bigWig
180
bam
134
zippedFastqFolder
128
fastq
114
bed narrowPeak
102
tsv
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
505
Homo sapiens
Biosample type
505
primary cell
352
tissue
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
133
epithelium
133
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
265
HPAP
204
T1D
35
AMP
1
ITG
Genome assembly (visualization)
218
hg19
188
GRCh38
Lab
AMP-T2D consortium
265
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
month_released!
September, 2020
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
505 results
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total RNA-seq
ChIP-seq
snATAC-seq
WGBS
ATAC-seq
single cell RNA-seq
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
48
45
pancreatic alpha cell
27
31
27
1
pancreatic beta cell
10
16
15
1
exocrine cell
39
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