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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
231
total RNA-seq
197
ATAC-seq
99
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
332
Transcription
285
DNA accessibility
279
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
September, 2020
58
August, 2017
55
June, 2019
July, 2018
43
April, 2018
42
February, 2021
34
October, 2019
22
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
562
bigWig
561
bam
313
fastq
295
bed narrowPeak
216
tsv
109
bigBed narrowPeak
100
tagAlign
93
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
923
Homo sapiens
Biosample type
2619
tissue
923
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
301
epithelium
243
pancreas
36
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
500
AMP
218
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
570
hg19
485
GRCh38
Lab
465
AMP-T2D consortium
239
Kyle Gaulton, UCSD
218
Klaus Kaestner, Upenn
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2020
July, 2018
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
923 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
45
48
pancreatic alpha cell
13
37
33
5
1
pancreatic beta cell
13
20
22
3
1
CD8-positive, alpha-beta T cell
33
4
2
1
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