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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
230
total RNA-seq
197
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
230
Transcription
Date released
76
February, 2023
55
May, 2021
47
May, 2020
26
September, 2018
September, 2020
12
July, 2019
5
December, 2019
4
November, 2020
2
October, 2018
2
October, 2019
1
February, 2021
Available data
151
bigWig
149
bam
149
tsv
104
fastq
2
bed bed3+
Organism
230
Homo sapiens
Biosample type
1032
tissue
230
primary cell
136
in vitro differentiated cells
113
cell line
Organ
77
epithelium
65
pancreas
10
connective tissue
6
kidney
5
liver
4
heart
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
musculature of body
1
pericardium
Project
96
T1D
76
HPAP
58
AMP
Genome assembly (visualization)
151
hg19
149
GRCh38
Lab
98
Kyle Gaulton, UCSD
76
Klaus Kaestner, Upenn
56
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
month_released!
September, 2020
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
230 results
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total RNA-seq
primary cell
monocyte
54
exocrine cell
39
pancreatic alpha cell
37
pancreatic beta cell
20
hepatocyte
5
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