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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
228
total RNA-seq
197
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
24
DNase-seq
17
pCHi-C
8
RRBS
6
Hi-C
1
DNAme array
1
small RNA-seq
Assay category
376
Transcription
277
DNA accessibility
246
DNA binding
56
DNA methylation
6
3D chromatin structure
Target of assay
212
histone
212
histone modification
109
broad histone mark
103
narrow histone mark
29
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
June, 2019
23
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
570
bigWig
564
bam
362
fastq
266
tsv
265
bed narrowPeak
134
zippedFastqFolder
100
tagAlign
79
bigBed narrowPeak
36
bed broadPeak
36
bigBed broadPeak
28
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
978
Homo sapiens
Biosample type
2562
tissue
978
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
387
epithelium
327
pancreas
39
connective tissue
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
508
AMP
265
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
585
hg19
500
GRCh38
Lab
473
AMP-T2D consortium
265
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2020
organ_slims!
musculature of body
vasculature
BIOSAMPLE
ASSAY
978 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
37
33
12
31
1
Langerhans cell
45
48
pancreatic beta cell
13
20
22
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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