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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
total RNA-seq
209
ChIP-seq
194
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
9
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
380
Transcription
277
DNA accessibility
209
DNA binding
57
DNA methylation
8
3D chromatin structure
Target of assay
184
histone
184
histone modification
97
broad histone mark
87
narrow histone mark
20
control
8
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
13
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
549
bigWig
531
bam
310
fastq
270
tsv
249
bed narrowPeak
134
zippedFastqFolder
88
tagAlign
77
bigBed narrowPeak
35
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
948
Homo sapiens
Biosample type
2493
tissue
948
primary cell
662
cell line
326
in vitro differentiated cells
10
stem cell
Organ
358
epithelium
286
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
478
AMP
265
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
564
hg19
479
GRCh38
Lab
443
AMP-T2D consortium
265
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
30
audit script error
Audit category:
32
missing controlled_by
month_released!
September, 2020
August, 2017
organ_slims!
vein
BIOSAMPLE
ASSAY
948 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
37
32
12
31
1
Langerhans cell
45
48
pancreatic beta cell
20
21
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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