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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
16
WGBS
8
single cell RNA-seq
Assay category
35
DNA methylation
8
Transcription
Date released
23
July, 2019
7
November, 2018
6
August, 2017
6
February, 2021
1
September, 2018
Available data
2810
bam
2644
bigWig
1481
tsv
1413
bed narrowPeak
890
fastq
687
bigBed narrowPeak
378
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
134
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
43
Homo sapiens
Biosample type
31
tissue
12
primary cell
cell line
Organ
9
kidney
8
heart
6
epithelium
6
pancreas
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
43
AMP
Genome assembly (visualization)
19
hg19
16
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
5
audit script error
2
inconsistent ontology term
month_released!
September, 2020
biosample_type!
cell line
BIOSAMPLE
ASSAY
43 results
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RRBS
WGBS
single cell RNA-seq
tissue
kidney
1
5
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
+ See 11 more…
primary cell
pancreatic cell
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
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