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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
41
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
Assay category
60
DNA accessibility
41
DNA methylation
41
Transcription
Date released
134
May, 2022
September, 2020
6
February, 2021
1
November, 2018
1
September, 2018
Available data
3392
bam
3166
bigWig
1817
bed narrowPeak
1600
tsv
1317
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
134
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
142
Homo sapiens
Biosample type
136
primary cell
6
tissue
Organ
80
epithelium
80
pancreas
5
kidney
1
liver
Project
134
HPAP
8
AMP
Lab
134
Klaus Kaestner, Upenn
8
AMP-T2D consortium
Audit category:
5
audit script error
month_released!
September, 2020
BIOSAMPLE
ASSAY
142 results
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Clear Filters
WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
pancreatic cell
2
tissue
kidney
5
liver
1
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