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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
1
ChIP-seq
Assay category
5
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
4
July, 2019
2
October, 2019
Available data
3392
bam
3166
bigWig
1817
bed narrowPeak
1600
tsv
1317
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
134
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
6
Homo sapiens
Biosample type
4
primary cell
1
cell line
1
tissue
Organ
4
brain
2
blood vessel
2
epithelium
2
vasculature
1
connective tissue
1
liver
1
pancreas
Project
6
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
6
AMP-T2D consortium
Audit category:
1
inconsistent assembly
month_released!
September, 2020
BIOSAMPLE
ASSAY
6 results
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Hi-C
ChIP-seq
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
tissue
medial globus pallidus
1
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