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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
total RNA-seq
27
ATAC-seq
27
snATAC-seq
12
single cell RNA-seq
6
WGBS
Assay category
94
Transcription
54
DNA accessibility
6
DNA methylation
Date released
76
February, 2023
45
February, 2021
September, 2020
24
May, 2022
7
August, 2020
1
March, 2019
1
October, 2017
Available data
267
bigWig
234
bed narrowPeak
205
bam
154
fastq
134
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
154
Homo sapiens
Biosample type
128
primary cell
26
tissue
Organ
76
pancreas
50
epithelium
Project
128
HPAP
26
AMP
Genome assembly (visualization)
19
hg19
8
GRCh38
Lab
AMP-T2D consortium
128
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
month_released!
September, 2020
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
154 results
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total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
WGBS
primary cell
Langerhans cell
27
12
exocrine cell
39
pancreatic alpha cell
27
5
6
pancreatic beta cell
10
2
tissue
islet of Langerhans
6
20
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