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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
48
snATAC-seq
WGBS
46
ATAC-seq
45
single cell RNA-seq
3
Hi-C
Assay category
121
Transcription
94
DNA accessibility
3
3D chromatin structure
Date released
93
May, 2022
76
February, 2023
September, 2020
39
February, 2021
7
August, 2020
3
October, 2022
Available data
122
fastq
93
zippedFastqFolder
7
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
218
Homo sapiens
Biosample type
218
primary cell
Organ
86
epithelium
86
pancreas
Project
218
HPAP
Genome assembly (visualization)
7
GRCh38
3
hg19
Lab
3884
AMP-T2D consortium
343
Kyle Gaulton, UCSD
218
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
September, 2020
assay_title!
WGBS
BIOSAMPLE
ASSAY
218 results
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total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
Hi-C
primary cell
Langerhans cell
48
45
pancreatic alpha cell
27
27
1
exocrine cell
39
pancreatic beta cell
10
15
1
pancreatic acinar cell
4
1
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