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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
66
single cell RNA-seq
65
total RNA-seq
29
ATAC-seq
6
WGBS
Assay category
131
Transcription
72
DNA binding
29
DNA accessibility
6
DNA methylation
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
September, 2020
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
317
bam
298
bigWig
238
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
238
Homo sapiens
Biosample type
219
primary cell
19
in vitro differentiated cells
Organ
465
liver
452
pancreas
238
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
188
AMP
50
HPAP
Genome assembly (visualization)
178
GRCh38
173
hg19
Lab
188
AMP-T2D consortium
50
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
September, 2020
August, 2022
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
13
12
37
11
6
pancreatic beta cell
13
12
20
9
pancreatic ductal cell
13
9
4
4
pancreatic acinar cell
8
9
4
5
pancreatic delta cell
11
+ See 5 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
See all biosamples
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