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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
88
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
88
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
51
histone
51
histone modification
26
narrow histone mark
25
broad histone mark
21
control
16
transcription factor
5
RNA binding protein
Date released
132
May, 2021
August, 2017
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
194
bam
177
bigWig
131
tsv
55
bed narrowPeak
44
fastq
26
tagAlign
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
txt
2
bigBed narrowPeak
2
ibed
Organism
283
Homo sapiens
Biosample type
2445
tissue
970
primary cell
662
cell line
283
in vitro differentiated cells
7
stem cell
Organ
29
connective tissue
16
embryo
5
epithelium
3
pancreas
1
adipose tissue
1
heart
Project
283
AMP
Genome assembly (visualization)
210
hg19
178
GRCh38
4
hg18
Lab
229
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
2
inconsistent control read length
month_released!
September, 2020
December, 2017
August, 2017
BIOSAMPLE
ASSAY
283 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
cardiac precursors (cardiac muscle cell)
19
1
1
adipocyte
5
8
1
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