Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
95
total RNA-seq
43
single cell RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
151
DNA binding
138
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
September, 2020
2
March, 2019
1
March, 2023
Available data
298
bam
296
bigWig
293
fastq
138
tsv
118
bed narrowPeak
38
bigBed narrowPeak
33
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
292
Homo sapiens
Biosample type
164
tissue
85
primary cell
49
in vitro differentiated cells
Organ
191
pancreas
67
connective tissue
50
epithelium
19
liver
16
adipose tissue
Project
298
AMP
Genome assembly (visualization)
325
hg19
298
GRCh38
Lab
298
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2020
BIOSAMPLE
ASSAY
298 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
21
95
1
liver
18
pancreas
12
white adipose tissue
12
adipose tissue
1
2
+ See 2 more…
primary cell
skeletal muscle myoblast
13
pancreatic endocrine cell
12
pancreatic alpha cell
7
3
1
pancreatic beta cell
7
3
1
pancreatic acinar cell
6
1
+ See 7 more…
in vitro differentiated cells
adipocyte
48
1
See all biosamples
Download