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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
7
DNase-seq
Assay category
66
DNA binding
7
DNA accessibility
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
15
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
642
bam
541
bigWig
502
bed narrowPeak
382
bigBed narrowPeak
324
fastq
127
tagAlign
79
bed broadPeak
73
bigBed broadPeak
16
tsv
8
bed bed3+
4
hic
4
tar
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
Organism
73
Homo sapiens
Biosample type
59
cell line
10
primary cell
4
tissue
Organ
58
liver
10
vasculature
8
blood vessel
8
epithelium
6
brain
4
limb
4
vein
2
artery
2
nerve
1
pancreas
Project
73
AMP
Genome assembly (visualization)
73
hg19
57
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
13
inconsistent control read length
month_released!
September, 2020
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
tissue
tibial artery
2
tibial nerve
2
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