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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
48
snATAC-seq
47
WGBS
46
ATAC-seq
45
single cell RNA-seq
Assay category
121
Transcription
94
DNA accessibility
47
DNA methylation
Date released
134
May, 2022
76
February, 2023
September, 2020
45
February, 2021
7
August, 2020
October, 2022
Available data
134
zippedFastqFolder
128
fastq
7
bigWig
6
tsv
Organism
262
Homo sapiens
Biosample type
262
primary cell
Organ
130
epithelium
130
pancreas
Project
262
HPAP
Genome assembly (visualization)
7
GRCh38
Lab
3909
AMP-T2D consortium
343
Kyle Gaulton, UCSD
262
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
month_released!
September, 2020
October, 2022
organ_slims!
intestine
BIOSAMPLE
ASSAY
262 results
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total RNA-seq
snATAC-seq
WGBS
ATAC-seq
single cell RNA-seq
primary cell
Langerhans cell
48
45
pancreatic alpha cell
27
31
27
pancreatic beta cell
10
16
15
exocrine cell
39
pancreatic acinar cell
4
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