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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
17
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
96
Transcription
8
DNA accessibility
Target of assay
84
histone
histone modification
44
broad histone mark
40
narrow histone mark
Date released
68
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
96
bam
96
bigWig
96
tsv
Organism
126
Homo sapiens
Biosample type
120
primary cell
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2750
AMP
132
HPAP
126
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
126
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
month_released!
September, 2020
organ_slims!
pancreas
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
126 results
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total RNA-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
cell line
EndoC_BH1
3
2
tissue
thymus
1
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