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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
RRBS
1
pCHi-C
1
total RNA-seq
Assay category
16
DNA binding
3
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
7
December, 2018
3
January, 2019
2
July, 2019
1
March, 2020
1
October, 2017
Available data
21
bam
20
fastq
13
bigWig
10
bed narrowPeak
9
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
23
Homo sapiens
Biosample type
22
tissue
1
primary cell
Organ
849
pancreas
749
liver
640
connective tissue
471
adipose tissue
461
epithelium
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
23
AMP-T2D consortium
month_released!
September, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
RRBS
pCHi-C
total RNA-seq
tissue
spleen
16
2
1
1
1
pericardium
1
primary cell
pericardium fibroblast
1
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