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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
Assay category
22
DNA binding
Target of assay
754
histone modification
753
histone
479
transcription factor
388
narrow histone mark
364
broad histone mark
308
control
98
RNA binding protein
88
recombinant protein
22
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
9
November, 2017
6
January, 2019
3
December, 2017
2
December, 2018
2
November, 2018
Available data
22
bam
22
bed narrowPeak
22
bigBed narrowPeak
22
bigWig
22
fastq
3
bed broadPeak
3
bigBed broadPeak
Organism
22
Homo sapiens
Biosample type
19
cell line
2
tissue
1
in vitro differentiated cells
primary cell
Organ
12
liver
10
blood
10
bodily fluid
1
epithelium
Project
22
AMP
Genome assembly (visualization)
22
hg19
21
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
month_released!
September, 2020
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
cell line
GM12878
10
HepG2
9
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
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