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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
Assay category
19
DNA binding
Target of assay
967
histone modification
966
histone
489
narrow histone mark
476
broad histone mark
442
transcription factor
343
control
101
RNA binding protein
88
recombinant protein
19
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
6
January, 2019
6
November, 2017
3
December, 2017
2
December, 2018
2
November, 2018
Available data
23
bam
23
bed narrowPeak
23
bigBed narrowPeak
23
bigWig
23
fastq
4
bed broadPeak
bigBed broadPeak
Organism
19
Homo sapiens
Biosample type
16
cell line
2
tissue
1
in vitro differentiated cells
Organ
10
blood
10
bodily fluid
9
liver
1
epithelium
Project
19
AMP
Genome assembly (visualization)
19
hg19
18
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
month_released!
September, 2020
audit.WARNING.category!
inconsistent control read length
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
19 results
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Clear Filters
ChIP-seq
cell line
GM12878
10
HepG2
6
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
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