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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
361
ChIP-seq
Assay category
361
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
5
February, 2021
1
November, 2019
Available data
356
bigWig
352
bed narrowPeak
349
bam
337
fastq
328
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
361
Homo sapiens
Biosample type
361
cell line
94
tissue
49
in vitro differentiated cells
10
primary cell
Organ
297
liver
51
blood
51
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
361
AMP
Genome assembly (visualization)
352
hg19
309
GRCh38
Lab
350
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
September, 2020
BIOSAMPLE
ASSAY
361 results
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ChIP-seq
cell line
HepG2
297
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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