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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
101
ChIP-seq
7
WGBS
1
FAIRE-seq
Assay category
197
DNA accessibility
101
DNA binding
Transcription
7
DNA methylation
Target of assay
68
transcription factor
25
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
0
April, 2018
Available data
305
bam
290
bigWig
283
bed narrowPeak
283
bigBed narrowPeak
196
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
87
fastq
7
bed bedMethyl
7
bigBed bedMethyl
Organism
305
Homo sapiens
Biosample type
189
tissue
61
cell line
55
primary cell
Organ
81
kidney
55
liver
43
musculature of body
35
heart
32
brain
32
limb
20
epithelium
19
connective tissue
18
ureter
15
blood
15
bodily fluid
11
pancreas
9
spleen
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
305
AMP
Genome assembly (visualization)
289
GRCh38
258
hg19
Lab
305
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
305 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 17 more…
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