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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
single cell RNA-seq
24
ChIP-seq
4
DNase-seq
2
ATAC-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
45
Transcription
24
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
74
bam
66
bigWig
45
tsv
38
fastq
21
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
77
Homo sapiens
Biosample type
248
tissue
77
primary cell
30
cell line
8
in vitro differentiated cells
Organ
66
epithelium
33
pancreas
21
blood vessel
21
vasculature
21
vein
11
kidney
2
connective tissue
1
liver
Project
77
AMP
Genome assembly (visualization)
69
hg19
65
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
77 results
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single cell RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
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