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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
653
total RNA-seq
129
ATAC-seq
84
RNA microarray
68
single cell RNA-seq
34
pCHi-C
29
snATAC-seq
11
ChIP-seq
10
Hi-C
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
721
Transcription
158
DNA accessibility
11
DNA binding
10
3D chromatin structure
6
DNA methylation
Target of assay
5
transcription factor
3
control
3
histone
3
histone modification
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
669
tsv
637
bam
623
bigWig
165
fastq
96
txt
91
bed narrowPeak
12
bed bed3
12
bedpe bed3+
10
hic
8
tagAlign
7
bed bedgraph
6
bed bed3+
6
csv
2
ibed
Organism
1032
Homo sapiens
Biosample type
686
tissue
180
primary cell
113
cell line
50
in vitro differentiated cells
4
stem cell
Organ
473
connective tissue
388
adipose tissue
158
bone element
141
pancreas
123
epithelium
109
heart
105
blood vessel
105
vasculature
101
artery
31
eye
16
skeleton
10
kidney
6
limb
6
liver
5
musculature of body
3
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
882
AMP
121
HPAP
30
T1D
Genome assembly (visualization)
700
hg19
668
GRCh38
Lab
886
AMP-T2D consortium
121
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
156
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
1033 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
single cell RNA-seq
pCHi-C
snATAC-seq
ChIP-seq
Hi-C
WGBS
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
tissue
adipose tissue
381
1
1
bone element
84
bone tissue
58
coronary artery
35
islet of Langerhans
7
13
6
2
2
+ See 41 more…
primary cell
Langerhans cell
12
27
exocrine cell
39
pancreatic alpha cell
27
3
6
pancreatic beta cell
10
3
pancreatic delta cell
7
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
28
2
1
3
2
1
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
+ See 4 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
5
5
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
1
2
1
immature adipocyte
2
2
+ See 5 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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